Laboratory at the YEARS clinic in Berlin

Genetics with a direct consequence

What is pharmacogenetics?

The part of genetics where the evidence is strongest and the consequence clearest. For one gene the European Medicines Agency even recommends testing before treatment starts. This page shows which gene-drug pairs matter and why the list is so short.

2020

EMA recommends DPD testing before fluoropyrimidines

5

gene-drug pairs with robust guidance

0

dose changes we make ourselves

The short answer

Not whether a medicine helps, but how you process it

Pharmacogenetics examines how inherited variants affect the efficacy and tolerability of medicines. Usually this concerns enzymes that break a drug down or first activate it. Anyone producing only limited amounts of such an enzyme has a higher blood concentration at standard doses and therefore a higher risk of side effects.

That sets it apart from the rest of preventive genetics: something concrete follows from a pharmacogenetic result, namely a different dose or a different preparation. But only for a manageable number of substances.

The established cases

Five gene-drug pairs where it genuinely matters

Not a complete list, but the cases with the clearest guidance. Anyone promising more should be able to name the source.

DPYD5-fluorouracil, capecitabine, tegafur, flucytosine

A deficiency of the degrading enzyme lets the drug accumulate in the blood. The consequences are severe, sometimes life-threatening side effects.

The EMA has recommended testing before starting treatment since April 2020. This is the most firmly established case in all of pharmacogenetics.

CYP2C19Clopidogrel, certain proton pump inhibitors, some antidepressants

Clopidogrel is a prodrug and has to be activated first. Anyone producing only limited enzyme does not reach the expected platelet inhibition.

International dosing guidance exists. Practically relevant above all after stent implantation.

TPMT und NUDT15Azathioprine, mercaptopurine, thioguanine

Impaired degradation leads to severe bone marrow suppression at standard doses.

Established dosing guidance, in routine use in rheumatology and gastroenterology for years.

CYP2D6Codeine, tramadol, tamoxifen, some antidepressants and antipsychotics

Codeine is only converted to morphine in the body. Ultra-rapid metabolisers produce unusually much of it, poor metabolisers almost none, and then the pain relief fails to appear.

Well studied, with warnings in the product information. Genetics is one factor among several here.

SLCO1B1Simvastatin and other statins

Reduced uptake into liver cells raises blood concentrations and with it the risk of muscle symptoms.

Relevant above all for people who stopped statins because of muscle symptoms without a cause being found.

Four limits that come with it

The list is short, and that is the point

For a manageable number of gene-drug pairs there is robust guidance. For the great majority of medicines there is none. A provider promising a pharmacogenetic profile for hundreds of substances is extrapolating far beyond the evidence.

The gene does not explain the whole effect

Kidney function, liver function, age, weight, co-medication, smoking and adherence often influence drug concentration more than a variant does. Pharmacogenetics shifts an assessment; it does not replace clinical observation.

A result without current medication stays on file

Anyone not taking one of the affected substances gains nothing from a pharmacogenetic result today. The value lies in having it on file when one of those therapies comes up. That is a legitimate reason to obtain it, but a different one from an immediate benefit.

A result changes nothing without the treating physician

A dose is not changed because of a laboratory sheet but by the person running the treatment. A pharmacogenetic result therefore belongs in their hands, not in self-directed use. Never stop or re-dose a medicine on your own.

How a genetic risk factor differs from a diagnosis is set out on genetic risk factors. The difference between a mail-order test and a medical examination is set out on genetic analysis or online DNA test.

Sources

What the statements on this page rest on

  1. European Medicines Agency, Empfehlung zur DPD-Testung, 30. April 2020

    Basis for the statement that testing for DPD deficiency should take place before treatment with fluorouracil, capecitabine, tegafur or flucytosine, either via blood uracil levels or via DPYD variants.

  2. DGHO, Positionspapier zur DPD-Testung, 2020

    The German professional-society framing of the same recommendation, jointly supported by several specialist societies.

  3. Clinical Pharmacogenetics Implementation Consortium (CPIC), Leitlinien

    The internationally used collection of dosing recommendations per gene-drug pair, including CYP2C19, TPMT, NUDT15, CYP2D6 and SLCO1B1. Each guideline states its own evidence level.

Common questions about pharmacogenetics

Pharmacogenetics examines how inherited variants affect the efficacy and tolerability of medicines. The most common mechanism concerns enzymes that break a drug down or first activate it. Anyone producing only limited amounts of such an enzyme has a higher drug concentration at standard doses and therefore a higher risk of side effects. Conversely, a drug that must be activated in the body may simply not work when the enzyme is impaired. Unlike many other genetic statements, pharmacogenetics therefore has a direct practical consequence: a different dose or a different preparation.

For individual gene-drug pairs, very well; across the breadth of all medicines, not at all. The most robust example is DPYD: since April 2020 the European Medicines Agency has recommended testing for DPD deficiency before treatment with fluorouracil, capecitabine, tegafur or flucytosine, because that deficiency leads to severe and sometimes life-threatening side effects. Similarly clear guidance exists for TPMT and NUDT15 before thiopurines and for CYP2C19 with clopidogrel. For the great majority of substances, by contrast, no robust recommendation exists. The shortness of that list is the actual information.

Most of all for three groups. First: people facing one of the affected treatments concretely, above all chemotherapy with fluoropyrimidines or thiopurine therapy. Second: people who did not tolerate a medicine because of side effects without a cause being found, such as muscle symptoms on statins. Third: people on long-term medication where the effect falls short of what was expected. Without one of these reasons, the benefit lies in having the result on file should such a treatment ever arise. That is a legitimate but weaker reason.

A pharmacogenetic profile is part of the genetic analysis and is obtained in the Ultimate program together with whole-genome sequencing. Findings are interpreted medically and documented in writing so that you can pass them to the people running your treatment. That is precisely the point: a pharmacogenetic result only acquires value where a prescription is written, not with us. We do not change ongoing medication; we supply the basis for it to the treating physician. Which procedures sit in which program is set out on the program page.

It cannot predict whether a medicine will help you. It says something about metabolism and tolerability, not about therapeutic success. Nor does it explain all the variation between people: kidney function, liver function, age, weight, co-medication, smoking and adherence often matter more than a variant. And it does not replace clinical observation, because a side effect shows up before a test result explains it. A pharmacogenetic result is therefore an additional factor in a decision that remains a medical one, and never a reason to change medication on your own.

A medicine that does not work or is not tolerated?

15 minutes, free of charge. We clarify whether pharmacogenetics contributes anything in your case, and say so when it does not.

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